본문 바로가기 주메뉴 바로가기
국회도서관 홈으로 정보검색 소장정보 검색

초록보기

Recent technological advances in biology promise unprecedented opportunities for rapid and sustainable advancement of crop quality. Following this trend, the Rosaceae research community continues to generate large amounts of genomic, genetic and breeding data. These include annotated whole genome sequences, transcriptome and expression data, proteomic and metabolomic data, genotypic and phenotypic data, and genetic and physical maps. Analysis, storage, integration and dissemination of these data using bioinformatics tools and databases are essential to provide utility of the data for basic, translational and applied research. This review discusses the currently available genomics and bioinformatics resources for the Rosaceae family.

권호기사

권호기사 목록 테이블로 기사명, 저자명, 페이지, 원문, 기사목차 순으로 되어있습니다.
기사명 저자명 페이지 원문 목차
Synthetic chitinase gene driven by root-specific LjNRT2 and AtNRT2.1 promoters confers resistance to Fusarium oxysporum in transgenic tobacco and tomato Kynet Kong, So Makabe, Valentine Otang Ntui, Raham Sher Khan, Ikuo Nakamura pp.151-159
Translational genomics in Brassica crops : challenges, progress, and future prospects Rehna Augustine, Gulab C. Arya, Deepti M. Nambiar, Roshan Kumar, Naveen C. Bisht pp.65-81
Advances in biotechnological applications in three important food legumes Alok Das, Swarup K. Parida pp.83-99
Prokaryotic expression and protein function of Brassica napus PGIP2 and its genetic transformation Haiyan HuangFu, Chunyun Guan, Furong Jin, Changfa Yin pp.171-181
Differential expression of limonene synthase gene affects production and composition of essential oils in leaf and floret of transgenic lavandin(Lavandula × intermedia Emeric ex Loisel.) Masato Tsuro, Satoshi Asada pp.193-201
Identification of AtWRKY75 as a transcriptional regulator in the defense response to Pcc through the screening of Arabidopsis activation-tagged lines Changhyun Choi, Young Ho Park, Soon Il Kwon, Chunghyo Yun, Ilpyung Ahn, Sang Ryeol Park, Duk-Ju Hwang pp.183-192
Analysis of expressed sequence tags from Centella asiatica (L.) Urban hairy roots elicited by methyl jasmonate to discover genes related to cytochrome P450s and glucosyltransferases Ok Tae Kim, Yurry Um, Mei Lan Jin, Young Chang Kim, Kyong Hwan Bang, Dong Yun Hyun, Hyoung Seok Lee, Yi Lee pp.211-220
Enhancement of starch accumulation in plants by exogenously applied methyl jasmonate Masakazu Hara, Ikuo Takahashi pp.143-149
Overexpression of AtNAC2(ANAC092) in groundnut(Arachis hypogaea L.) improves abiotic stress tolerance Mahesh Patil, S.V. Ramu, P. Jathish, Rohini Sreevathsa, P. Chandrashekar Reddy, T.G. Prasad, M. Udayakumar pp.161-169
Complete mitochondrial genome sequence of Pyropia yezoensis(Bangiales, Rhodophyta) from Korea Mi Sook Hwang, Seung-Oh Kim, Dong-Soo Ha, Jee Eun Lee, Sang-Rae Lee pp.221-227
Characterization and fine mapping of a shortened uppermost internode mutant in rice Hyeonso Ji, Hakbum Kim, Doh-Won Yun, Ung-Han Yoon, Tae-Ho Kim, Moo-Young Eun, Gang-Seob Lee pp.125-134
Genomics and bioinformatics resources for translational science in Rosaceae Sook Jung, Dorrie Main pp.49-64
A MORN-domain protein regulates growth and seed production and enhances freezing tolerance in Arabidopsis Jeongyeo Lee, Ching-Tack Han, HyeRan Kim, Yoonkang Hur pp.229-241
Application of genetics and genomics towards Capsicum translational research Nirala Ramchiary, Mechuselie Kehie, Vijaya Brahma, Suman Kumaria, Pramod Tandon pp.101-123
Overexpression of stearoyl-ACP desaturase enhances accumulations of oleic acid in the green alga Chlamydomonas reinhardtii Kwon Hwangbo, Joon-Woo Ahn, Jong-Min Lim, Youn-Il Park, Jang Ryol Liu, Won-Joong Jeong pp.135-142
Deep sequencing of microRNAs from hickory reveals an extensive degradation and 3' end modification Zhengjia Wang, Jianqin Huang, Youjun Huang, Bingsong Zheng pp.203-209

참고문헌 (116건) : 자료제공( 네이버학술정보 )

참고문헌 목록에 대한 테이블로 번호, 참고문헌, 국회도서관 소장유무로 구성되어 있습니다.
번호 참고문헌 국회도서관 소장유무
1 Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF et al (1991) Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252:1651–1656 미소장
2 Aharoni A, Keizer LC, Van Den Broeck HC, Blanco-Portales R, Mun˜oz-Blanco J, Bois G, Smit P, De Vos RC, O’Connell AP (2002) Novel insight into vascular, stress, and auxin-dependent and -independent gene expression programs in strawberry, a non-climacteric fruit. Plant Physiol 129:1019–1031 미소장
3 Aharoni A, Giri AP, Verstappen FW, Bertea CM, Sevenier R, Sun Z, Jongsma MA, Schwab W, Bouwmeester HJ (2004) Gain and loss of fruit flavor compounds produced by wild and cultivated strawberry species. Plant Cell 16:3110–3131 미소장
4 Ahmad R, Parfitt DE, Fass J, Ogundiwin E, Dhingra A, Gradziel TA, Lin D, Joshi NA, Martinez-Garcia PJ, Crisosto CH (2011) Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection. BMC Genomics 12:569 미소장
5 Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJP, Chothia C, Murzin AG (2008) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res 36:D419–D425 미소장
6 Aoki KF, Kanehisa M (2005) Using the KEGG database resource. Curr Protoc Bioinforma Chapter 1:Unit 1.12 미소장
7 Audergon JM, Ruiz D, Bachellez A, Blanc A, Corre MN, Croset C, Ferre´ol AM, Lambert P, Pascal T, Poe¨ssel JL, Signoret V, Quilot B, Gouble B, Grotte M, Boge´ M, Reiling P, Reich M, Bureau S, Boudehri K, Renaud C, Dirlewanger E, Deborde C, Maucourt M, Moing A, Monllor S, Dondini L, Aru´s P (2009) ISAFRUIT:study of the genetic basis of Prunus fruit quality in two peach and two apricot populations. Acta Hortic 814:523–528 미소장
8 Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S (2008) Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science 320:938–941 미소장
9 Batzoglou S, Jaffe DB, Stanley K, Butler J, Gnerre S, Mauceli E, Berger B, Mesirov JP, Lander ES (2002) ARACHNE: a whole genome shotgun assembler. Genome Res 13:91–96 미소장
10 Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW (2013) GenBank. Nucleic Acids Res 41:D36–D42 미소장
11 Berman H, Henrick K, Nakamura H, Markley JL (2007) The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Res 35:D301–D303 미소장
12 Bink MC, van Eeuwijk FA (2009) A Bayesian QTL linkage analysis of the common dataset from the 12th QTLMAS workshop. BMC Proc 3(Suppl 1):S4 미소장
13 Bombarely A, Merchante C, Csukasi F, Cruz-Rus E, Caballero JL, Medina-Escobar N, Blanco-Portales R, Botella MA, Mun˜oz-Blanco J, Sa´nchez-Sevilla JF, Valpuesta V (2010) Generation and analysis of ESTs from strawberry (Fragaria 9 ananassa) fruits and evaluation of their utility in genetic and molecular studies. BMC Genomics 11:503 미소장
14 Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA (2011) The sol genomics network (solgenomics.net): growing tomatoes using Perl. Nucleic Acids Res 39:D1149–D1155 미소장
15 Botton A, Eccher G, Forcato C, Ferrarini A, Begheldo M, Zermiani M, Moscatello S, Battistelli A, Velasco R, Ruperti B, Ramina A (2011) Signaling pathways mediating the induction of apple fruitlet abscission. Plant Physiol 155:185–208 미소장
16 Cabrera A, Kozik A, Howad W, Arus P, Iezzoni AF, van der Knaap E (2009) Development and bin mapping of a Rosaceae conserved ortholog set (COS) of markers. BMC Genomics 10:562 미소장
17 Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP (2008) Discovery and revision of Arabidopsis genes by proteogenomics. Proc Natl Acad Sci USA 105:21034–21038 미소장
18 Chagne D, Crowhurst R, Troggio M, Davey M, Gilmore B, Lawley C, Vanderzante S,Hellens R, Kumar S,CestaroA, VelascoR,MainD, Rees J, Iezzoni A,Mockler T, Wilhelm L, van de Weg E, Gardiner S, Bassil N, Peace C (2012) Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. PLoS ONE 7(2):e31745. doi:10.1371/journal.pone.0031745 미소장
19 Cochrane G, Alako B, Amid C, Bower L, Cerden˜o-Ta´rraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, Pakseresht N, Pallreddy S, Park Y, Plaister S, Radhakrishnan R, Rivie`re S, Rossello M, Senf A, Silvester N, Smirnov D, Ten Hoopen P, Toribio A, Vaughan D, Zalunin V (2013) Facing growth in the European nucleotide archive. Nucleic Acids Res 41:D30–D35 미소장
20 Costa F, Alba R, Schouten H, Soglio V, Gianfranceschi L, Serra S, Musacchi S, Sansavini S, Costa G, Fei Z, Giovannoni J (2010) Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening. BMC Plant Biol 10:229 미소장
21 Cuff AL, Sillitoe I, Lewis T, Clegg AB, Rentzsch R, Furnham N, Pellegrini-Calace M, Jones D, Thornton J, Orengo CA (2011) Extending CATH: increasing coverage of the protein structure universe and linking structure with function. Nucleic Acids Res 39:D420–D426 미소장
22 Dardick CD, Callahan AM, Chiozzotto R, Schaffer RJ, Piagnani MC, Scorza R (2010) Stone formation in peach fruit exhibits spatial coordination of the lignin and flavonoid pathways and similarity to Arabidopsis dehiscence. BMC Biol 8:13 미소장
23 Dewey CN (2007) Aligning multiple whole genomes with Mercator and MAVID. Methods Mol Biol 395:221–236 미소장
24 Diamant J, Sguigna V, Mezzetti B, Faedi W, Maltoni ML, Denoyes B, Chartier P, Petit A (2012) European small berries genetic resources, GENBERRY: testing a protocol for detecting fruit nutritional quality in EU strawberry germplasm collections. Acta Hortic 926:33–37 미소장
25 Dirlewanger E, Graziano E, Joobeur T, Garriga-Caldere F, Cosson P, Howad W, Arus P (2004) Comparative mapping and markerassisted selection in Rosaceae fruit crops. Proc Natl Acad Sci USA 101:9891–9896 미소장
26 Donlin MJ (2007) Using the Generic Genome Browser (GBrowse). Curr Protoc Bioinforma Chapter 9:Unit 9.9 미소장
27 Filichkin SA, Priest HD, Givan SA, Shen RK, Bryant DW, Fox SE, Wong WK, Mockler TC (2010) Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Gen Res 20:45–58 미소장
28 Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A (2010) The Pfam protein families database. Nucleic Acids Res 38:D211–D222 미소장
29 Geisler-Lee J, O’Toole N, Ammar R, Provart NJ, Millar AH, Geisler M (2007) A predicted interactome for Arabidopsis. Plant Physiol 145:317–329 미소장
30 GeorgiLL,WangY,YverggniauxD, Ormsbee T, Inigo M, ReighardGL, AbbottAG(2002) Construction of aBAClibrary and its application to the identification of simple sequence repeats in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 105:1151–1158 미소장
31 Gianfranceschi L, Soglio V (2004) The European project HiDRAS:innovative multidisciplinary approaches to breeding high quality disease resistant apples. Acta Hortic 663:327–330 미소장
32 Gibney G, Baxevanis AD (2011) Searching NCBI databases using Entrez. Curr Protoc Bioinforma Chapter 1:Unit 1.3 미소장
33 Haas BJ, Delcher AL, Wortman JR, Salzberg SL (2004) DAGchainer:a tool for mining segmental genome duplications and synteny. Bioinformatics 20:3643–3646 미소장
34 Heazlewood JL, Verboom RE, Tonti-Filippini J, Small I, Millar AH (2007) SUBA: the Arabidopsis subcellular database. Nucleic Acids Res 35:D213–D218 미소장
35 Horn R, Lecouls AC, Callahan A, Dandekar A, Garay L, McCord P, Howad W, Chan H, Verde I, Main D, Jung S, Georgi L, Forrest S, Mook J, Zhebentyayeva T, Yu Y, Kim HR, Jesudurai C, Sosinski B, Aru´s P, Baird V, Parfitt D, Reighard G, Scorza R, Tomkins J, Wing R, Abbott AG (2005) Candidate gene database and transcript map for peach, a model species for fruit trees. Theor Appl Genet 110:1419–1428 미소장
36 Howad W, Yamamoto T, Dirlewanger E, Testolin R, Cosson P, Cipriani G, Monforte AJ, Georgi L, Abbott AG, Aru´s P (2005) Mapping with a few plants: using selective mapping for microsatellite saturation of the Prunus reference map. Genetics 171:1305–1309 미소장
37 Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B, Ni P, Ren Y, Zhu H, Li J, Lin K, Jin W, Fei Z, Li G, Staub J, Kilian A, van der Vossen EA, Wu Y, Guo J, He J, Jia Z, Ren Y, Tian G, Lu Y, Ruan J, Qian W, Wang M, Huang Q, Li B, Xuan Z, Cao J, Asan WuZ, Zhang J, Cai Q, Bai Y, Zhao B, Han Y, Li Y, Li X, Wang S, Shi Q, Liu S, Cho WK, Kim JY, Xu Y, Heller-Uszynska K, Miao H, Cheng Z, Zhang S, Wu J, Yang Y, Kang H, Li M, Liang H, Ren X, Shi Z, Wen M, Jian M, Yang H, Zhang G, Yang Z, Chen R, Liu S, Li J, Ma L, Liu H, Zhou Y, Zhao J, Fang X, Li G, Fang L, Li Y, Liu D, Zheng H, Zhang Y, Qin N, Li Z, Yang G, Yang S, Bolund L,... 미소장
38 Hummel J, Selbig J, Walther D, Kopka J (2007) The Golm metabolome database: a database for GC–MS based metabolite profiling. In: Nielsen J, Jewett MC (eds) Metabolomics. Springer, Berlin, pp 75–96 미소장
39 Hummel J, Strehmel N, Selbig J, Walther D, Kopka J (2010) Decision tree supported substructure prediction of metabolites from GC–MS profiles. Metabolomics 6:322–333 미소장
40 Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, Duquenne L, Finn RD, Fraser M, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, McMenamin C, Mi H, Mutowo-Muellenet P, Mulder N, Natale D, Orengo C, Pesseat S, Punta M, Quinn AF, Rivoire C, Sangrador-Vegas A, Selengut JD, Sigrist CJ, Scheremetjew M, Tate J, Thimmajanarthanan M, Thomas PD, Wu CH, Yeats C, Yong SY (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res... 미소장
41 Iezzoni A, Weebadde C, Luby J, Yue C, Peace C, Bassil N, McFerson J (2010) RosBREED: enabling marker-assisted breeding in Rosaceae. Acta Hortic 859:389–394 미소장
42 Ilic K, Kellogg EA, Jaiswal P, Zapata F, Stevens PF, Vincent LP, Avraham S, Reiser L, Pujar A, Sachs MM, Whitman NT, McCouch SR, Schaeffer ML, Ware DH, Stein LD, Rhee SY (2007) The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiol 143:587–599 미소장
43 International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:793–800 미소장
44 Isserlin R, El-Badrawi RA, Bader GD (2011) The biomolecular interaction network database in PSI-MI 2.5. Database 2011:baq037 미소장
45 Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruye`re C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe` ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Que´tier F, Wincker P, French-Italian Public... 미소장
46 Janssen BJ, Thodey K, Schaffer RJ, Alba R, Balakrishnan L, Bishop R, Bowen JH, Crowhurst RN, Gleave AP, Ledger S, McArtney S, Pichler FB, Snowden KC, Ward S (2008) Global gene expression analysis of apple fruit development from the floral bud to ripe fruit. BMC Plant Biol 8:16 미소장
47 Jensen PJ, Halbrendt N, Fazio G, Makalowska I, Altman N, Praul C, Maximova SN, Ngugi HK, Crassweller RM, Travis JW, McNellis TW (2012) Rootstock-regulated gene expression patterns associated with fire blight resistance in apple. BMC Genomics 13:9 미소장
48 Jung S, Staton M, Lee T, Blenda A, Svancara R, Abbott A, Main D (2008) GDR (Genome Database for Rosaceae): integrated webdatabase for Rosaceae genomics and genetics data. Nucleic Acids Res 36:D1034–D1040 미소장
49 Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Aru´s P, Shulaev V, Verde I, Morgante M, Rokhsar D, Velasco R, Sargent DJ (2012) Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies. BMC Genomics 13:129 미소장
50 Kaminuma E, Kosuge T, Kodama Y, Aono H, Mashima J, Gojobori T, Sugawara H, Ogasawara O, Takagi T, Okubo K, Nakamura Y (2011) DDJB progress report. Nucleic Acids Res 39:D22–D27 미소장
51 Khan MA, Han Y, Zhao YF, Korban SS (2012) A high-throughput apple SNP genotyping platform using the GoldenGateTM assay. Gene 492:196–201 미소장
52 Krost C, Petersen R, Lokan S, Brauksiepe B, Braun P, Schmidt ER (2013) Evaluation of the hormonal state of columnar apple trees (Malus 9 domestica) based on high throughput gene expression studies. Plant Mol Biol 81:211–220 미소장
53 Lalli DA, Decroocq V, Blenda AV, Schurdi-Levraud V, Garay L, Le Gall O, Damsteegt V, Reighard GL, Abbott AG (2005) Identification and mapping of resistance gene analogs (RGAs) in Prunus: a resistance map for Prunus. Theor Appl Genet 111:1504–1513 미소장
54 Lamesch P, Berardini TZ, Li D, Swarbreck D, Wilks C, Sasidharan R, Muller R, Dreher K, Alexander DL, Garcia-Hernandez M, Karthikeyan AS, Lee CH, Nelson WD, Ploetz L, Singh S, Wensel A, Huala E (2012) The Arabidopsis information resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res 40:D1202–D1210 미소장
55 Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C (2008) Version VI of the ESTree db: an improved tool for peach transcriptome analysis. BMC Bioinforma 9(Suppl 2):S9 미소장
56 Lee YP, Yu GH, Seo YS, Han SE, Choi YO, Kim D, Mok IG, Kim WT, Sung SK (2007) Microarray analysis of apple gene expression engaged in early fruit development. Plant Cell Rep 26:917–926 미소장
57 Lee T, Cho I, Peace C, Jung S, Zheng P, Main D (2011) Development approach and architecture of GenSAS BIOCOMP’11, July 2011, Las Vegas 미소장
58 Lee TH, Tang H, Wang X, Paterson AH (2013) PGDD: a database of gene and genome duplication in plants. Nucleic Acids Res 41:D1152–D1158 미소장
59 Li Y, Wu B, Yu Y, Yang G, Wu C, Zheng C (2011) Genome-wide analysis of the RING finger gene family in apple. Mol Genet Genomics 286:81–94 미소장
60 Li X, Korir NK, Liu L, Shangguan L, Wang Y, Han J, Chen M, Fang J (2012) Microarray analysis of differentially expressed genes engaged in fruit development between Prunus mume and Prunus armeniaca. J Plant Physiol 169:1776–1788 미소장
61 Lister R, O’Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, Ecker JR (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133:523–536 미소장
62 Lyons E, Freeling M (2008) How to usefully compare homologous plant genes and chromosomes as DNA sequences. Plant J 53:661–673 미소장
63 Martı´nez-Go´mez P, Crisosto CH, Bonghi C, Rubio M (2011) New approaches to Prunus transcriptome analysis. Genetica 139:755–769 미소장
64 Matsuda F, Hirai MY, Sasaki E, Akiyama K, Yonekura-Sakakibara K, Provart NJ, Sakurai T, Shimada Y, Saito K (2010) AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol 152:566–578 미소장
65 McKay SJ, Vergara IA, Stajich JE (2010) Using the Generic Synteny Browser (GBrowse_syn). Curr Protoc Bioinforma Chapter 9:Unit 9.12 미소장
66 Mi H, Dong Q, Muruganujan A, Gaudet P, Lewis S, Thomas PD (2010) PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium. Nucleic Acids Res 38:D204–D210 미소장
67 Mihara M, Itoh T, Izawa T (2010) SALAD database: a motif-based database of protein annotations for plant comparative genomics. Nucleic Acids Res 38:D835–D842 미소장
68 Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EHA, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ et al (2006) Analyses of expressed sequence tags from apple. Plant Physiol 141:147–166 미소장
69 Ogundiwin EA, Martı´ C, Forment J, Pons C, Granell A, Gradziel TM, Peace CP, Crisosto CH (2008) Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit. Plant Mol Biol 68:379–397 미소장
70 Pampanwar V, Engler F, Hatfield J, Blundy S, Gupta G, Soderlund C (2005) FPC web tools for rice, maize, and distribution. Plant Physiol 138:116–126 미소장
71 Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS (2009) The Sorghum bicolor genome and the diversification of grasses. Nature 457:551–556 미소장
72 Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A (2012) Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PLoS ONE 7:e48305 미소장
73 Popescu SC, Popescu GV, Bachan S, Zhang Z, Seay M, Gerstein M, Snyder M, Dinesh-Kumar SP (2007) Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc Natl Acad Sci USA 104:4730–4735 미소장
74 Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP (2009) MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev 23:80–92 미소장
75 Pruitt KD, Tatusova T, Maglott DR (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35:D61–D65 미소장
76 Rouard M, Guignon V, Aluome C, Laporte MA, Droc G, Walde C, Zmasek CM, Pe´rin C, Conte MG (2011) GreenPhylDB v2.0:comparative and functional genomics in plants. Nucleic Acids Res 39:D1095–D1102 미소장
77 Santos AM, Oliver MJ, Sa´nchez AM, Payton PR, Gomes JP, Miguel C, Oliveira MM (2009) An integrated strategy to identify key genes in almond adventitious shoot regeneration. J Exp Bot 60:4159–4173 미소장
78 Sargent DJ, Kuchta P, Lopez Girona E, Zhang H, Davis TM, Celton JM, Marchese A, Korbin M, Folta KM, Shulaev V, Simpson DW (2011) Simple sequence repeat marker development and mapping targeted to previously unmapped regions of the strawberry genome sequence. Plant Genome 4:165–177 미소장
79 Schaeffer ML, Harper LC, Gardiner JM, Andorf CM, Campbell DA, Cannon EK, Sen TZ, Lawrence CJ (2011) MaizeGDB: curation and outreach go hand-in-hand. Database 2011:bar022 미소장
80 Schaffer RJ, Friel EN, Souleyre EJ, Bolitho K, Thodey K, Ledger S, Bowen JH, Ma JH, Nain B, Cohen D, Gleave AP, Crowhurst RN, Janssen BJ, Yao JL, Newcomb RD (2007) A genomics approach reveals that aroma production in apple is controlled by ethylene predominantly at the final step in each biosynthetic pathway. Plant Physiol 144:1899–1912 미소장
81 Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010) Genome sequence of the palaeopolyploid soybean. Nature 463:178–83. Erratum in: Nature 465:120 미소장
82 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A,... 미소장
83 Schwacke R, Schneider A, van der Graaff E, Fischer K, Catoni E, Desimone M, Frommer WB, Flu¨gge UI, Kunze R (2003) ARAMEMNON, a novel database for Arabidopsis integral membrane proteins. Plant Physiol 131:16–26 미소장
84 Shizuya H, Birren B, Kim UJ, Mancino V, Slepak T, Tachiiri Y, Simon M (1992) Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc Natl Acad Sci USA 89:8794–8797 미소장
85 Shulaev V, Korban SS, Sosinski B, Abbott AG, Aldwinckle HS, Folta KM, Iezzoni A, Main D, Aru´s P, Dandekar AM, Lewers K, Brown SK, Davis TM, Gardiner SE, Potter D, Veilleux RE (2008) Multiple models for Rosaceae genomics. Plant Physiol 147:985–1003 미소장
86 Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A,... 미소장
87 Simillion C, Janssens K, Sterck L, Van de Peer Y (2008) i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles. Bioinformatics 24:127–128 미소장
88 Spiller M, Linde M, Hibrand-Saint Oyant L, Tsai CJ, Byrne DH, Smulders MJ, Foucher F, Debener T (2011) Towards a unified genetic map for diploid roses. Theor Appl Genet 122:489–500 미소장
89 Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S (2002) The Generic Genome Browser: a building block for a model organism system database. Genome Res 12:1599–1610 미소장
90 Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH (2008) Synteny and collinearity in plant genomes. Science 320:486–488 미소장
91 Tatsuki M, Nakajima N, Fujii H, Shimada T, Nakano M, Hayashi KI, Hayama H, Yoshioka H, Nakamura Y (2013) Increased levels of IAA are required for system 2 ethylene synthesis causing fruit softening in peach (Prunus persica L. Batsch). J Exp Bot 64(4):1049–1059. doi:10.1093/jxb/ers381 미소장
92 Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA (2003) The COG database: an updated version includes eukaryotes. BMC Bioinforma 4:41 미소장
93 The Gene Ontology Consortium (2013) Gene ontology annotations and resources. Nucleic Acids Res 41:D530–D535 미소장
94 The UniProt Consortium (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res 40:D71–D75 미소장
95 Trainotti L, Zanin D, Casadoro G (2003) A cell wall-oriented genomic approach reveals a new and unexpected complexity of the softening in peaches. J Exp Bot 54:1821–1831 미소장
96 Van Bel M, Proost S,Wischnitzki E, Movahedi S, Scheerlinck C, Van de Peer Y, Vandepoele K (2012) Dissecting plant genomes with the PLAZAcomparative genomics platform. Plant Physiol 158:590–600 미소장
97 Vecchietti A, Lazzari B, Ortugno C, Bianchi F, Malinverni R, Caprera A, Mignani I, Pozzi C (2009) Comparative analysis of expressed sequence tags from tissues in ripening stages of peach (Prunus persica L. Batsch). Tree Genet Genome 5:377–391 미소장
98 Velankar S, Alhroub Y, Alili A, Best C, Boutselakis HC, Caboche S, Conroy MJ, Dana JM, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Penkett CJ, Pineda-Castillo J, Rinaldi L, Sahni G, Sawka G, Sen S, Slowley R, Sousa da Silva AW, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ (2011) PDBe: Protein Data Bank in Europe. Nucleic Acids Res 39(Suppl 1):D402–D410 미소장
99 Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM,... 미소장
100 Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Wilhelm L, Troggio M, Sosinski B, Aranzana MJ, Aru´s P, Iezzoni A, Morgante M, Peace C (2012) Development and evaluation of a 9 K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. PLoS ONE 7(4):e35668. doi:10.1371/journal.pone.0035668 미소장
101 Vizoso P, Meisel LA, Tittarelli A, Latorre M, Saba J, Caroca R, Maldonado J, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Silva H (2009) Comparative EST transcript profiling of peach fruits under different post-harvest conditions reveals candidate genes associated with peach fruit quality. BMC Genomics 10:423 미소장
102 Wang K, Wang Z, Li F, Ye W, Wang J, Song G, Yue Z, Cong L, Shang H, Zhu S, Zou C, Li Q, Yuan Y, Lu C, Wei H, Gou C, Zheng Z, Yin Y, Zhang X, Liu K, Wang B, Song C, Shi N, Kohel RJ, Percy RG, Yu JZ, Zhu YX, Wang J, Yu S (2012) The draft genome of a diploid cotton Gossypium raimondii. Nat Genet 44:1098–1103 미소장
103 Weber APM, Weber KL, Carr K, Wilkerson C, Ohlrogge JB (2007) Sampling the Arabidopsis transcriptome with massively parallel pyrosequecing. Plant Physiol 144:32–42 미소장
104 Wegrzyn JL, Lee JM, Tearse BR, Neale DB (2008) TreeGenes: a forest tree genome database. Intl J Plant Genomics 2008:412875. doi:10.1155/2008/412875 미소장
105 Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Geer LY, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Ostell J, Miller V, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E (2007) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 35:D5–D12 미소장
106 Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J (2009) SUPERFAMILY: sophisticated comparative genomics, data mining, visualization and phylogeny. Nucleic Acids Res 37:D380–D386 미소장
107 Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, Khan MA, Tao S, Korban SS, Wang H, Chen NJ, Nishio T, Xu X, Cong L, Qi K, Huang X, Wang Y, Zhao X, Wu J, Deng C, Gou C, Zhou W, Yin H, Qin G, Sha Y, Tao Y, Chen H, Yang Y, Song Y, Zhan D, Wang J, Li L, Dai M, Gu C, Wang Y, Shi D, Wang X, Zhang H, Zeng L, Zheng D, Wang C, Chen M, Wang G, Xie L, Sovero V, Sha S, Huang W, Zhang S, Zhang M, Sun J, Xu L, Li Y, Liu X, Li Q, Shen J, Wang J, Paull RE, Bennetzen JL, Wang J, Zhang S (2013) The genome of the pear (Pyrus bretschneideri Rehd.). Genome Res 23:396–408 미소장
108 Xu Q, Chen LL, Ruan X, Chen D, Zhu A, Chen C, Bertrand D, Jiao WB, Hao BH, Lyon MP, Chen J, Gao S, Xing F, Lan H, Chang JW, Ge X, Lei Y, Hu Q, Miao Y, Wang L, Xiao S, Biswas MK, Zeng W, Guo F, Cao H, Yang X, Xu XW, Cheng YJ, Xu J, Liu JH, Luo OJ, Tang Z, Guo WW, Kuang H, Zhang HY, Roose ML, Nagarajan N, Deng XX, Ruan Y (2012) The draft genome of sweet orange (Citrus sinensis). Nat Genet 45:59–66 미소장
109 Yao Q, Bollinger C, Gao J, Xu D, Thelen JJ (2012) P3DB: an integrated database for plant protein phosphorylation. Front Plant Sci 3:206 미소장
110 Yi G, Sze SH, Thon MR (2007) Identifying clusters of functionally related genes in genome. Bioinformatics 23:1053–1060 미소장
111 Youens-Clark K, Buckler E, Casstevens T, Chen C, Declerck G, Derwent P, Dharmawardhana P, Jaiswal P, Kersey P, Karthikeyan AS, Lu J, McCouch SR, Ren L, Spooner W, Stein JC, Thomason J, Wei S, Ware D (2011) Gramene database in 2010:updates and extensions. Nucleic Acids Res 39:D1085–D1094 미소장
112 Zhang Q, Chen W, Sun L, Zhao F, Huang B, Yang W, Tao Y, Wang J, Yuan Z, Fan G, Xing Z, Han C, Pan H, Zhong X, Shi W, Liang X, Du D, Sun F, Xu Z, Hao R, Lv T, Lv Y, Zheng Z, Sun M, Luo L, Cai M, Gao Y, Wang J, Yin Y, Xu X, Cheng T, Wang J (2012) The genome of Prunus mume. Nat Commun 3:1318 미소장
113 Zhebentyayeva T, Swire-Clark G, Georgi L, Garay L, Juns S, Forrest S, Blenda A, Blackmon B, Mook J, Horn R, Howad W, Arus P, Main D, Tomkins J, Sosinski B, Baird W, Reighard G, Abbott A (2008) A framework physical map for peach, a model Rosaceae species. Tree Genet Genome 4:745–756 미소장
114 Zhu Y, Varanasi V, Zheng P, Main D, Curry E, Mattheis J (2012) Multiple plant hormones and cell wall metabolism regulate apple fruit maturation patterns and texture attributes. Tree Genet Genome 8:1389–1406 미소장
115 Ziliotto F, Begheldo M, Rasori A, Bonghi C, Tonutti P (2008) Transcriptome profiling of ripening nectarine (Prunus persica L. Batsch) fruit treated with 1-MCP. J Exp Bot 59:2781–2791 미소장
116 Ziosi V, Bonghi C, Bregoli AM, Trainotti L, Biondi S, Sutthiwal S, Kondo S, Costa G, Torrigiani P (2008) Jasmonate-induced transcriptional changes suggest a negative interference with the ripening syndrome in peach fruit. J Exp Bot 59:563–573 미소장