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Dysphania ambrosioides (L.) Mosyakin & Clemants which belongs to Chenopodiaceae/Amaranthaceae sensu in APG system has been known as a useful plant in various fields as well as an invasive species spreading all over the world. To understand its phylogenetic relationship with neighbour species, we completed chloroplast genome of D. ambrosioides collected in Korea. Its length is 151,689 bp consisting of four sub-regions: 83,421 bp of large single copy (LSC) and 18,062 bp of small single copy (SSC) regions are separated by 25,103 bp of inverted repeat (IR) regions. 128 genes (84 protein-coding genes, eight rRNAs, and 36 tRNAs) were annotated. The overall GC content of the chloroplast genome is 36.9% and those in the LSC, SSC and IR regions are 34.9%, 30.3%, and 42.7%, respectively. Distribution of simple sequence repeats are similar to those of the other two Dysphania chloroplasts; however, different features can be utilized for population genetics. Nucleotide diversity of Dysphania chloroplast genomes 18 genes including two ribosomal RNAs contains high nucleotide diversity peaks, which may be genus or species-specific manner. Phylogenetic tree presents that D. ambrosioides occupied a basal position in genus Dysphania and phylogenetic relation of tribe level is presented clearly with complete chloroplast genomes.

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기사명 저자명 페이지 원문 목차
An efficient in vitro micropropagation for production of disease-free bulbs in Korean native Lilium Jae-Young Song, Jung-Yoon Yi, Mun-Sup Yoon, Jung-Ro Lee, Young-Yi Lee p. 730-734

A new record for invasive alien plant Ranunculus sardous crantz (ranunculaceae) in the Republic of Korea Eun-Mi Sun, Hye-Won Kim, Kang-Hyup Lee, Hee Soo Kim, Dong Chan Son p. 752-757

Gametophyte propagation and sporophyte formation of Asian chain fern [Woodwardia japonica (L. f.) Sm.] under various medium conditions in vitro and ex vitro Ju Sung Cho, Bo Kook Jang, Kyungtae Park, Ha Min Lee, Cheol Hee Lee p. 735-742

Screening of sclerotinia rot resistant Korean origin perilla (Perilla frutescens) germplasm using a detached leaf method Ho-Sun Lee, Tania Afroz, Young-Ah Jeon, Jung-Sook Sung, Ju-Hee Rhee, Awraris Derbie Aseefa, Jaejong Noh, Aejin Hwang, On-Sook Hur, Na-Young Ro, Jae-Eun Lee p. 743-751

Comparative analysis of chloroplast genome of Dysphania ambrosioides (L.) mosyakin & clemants understanding phylogenetic relationship in genus Dysphania R. Br. Yongsung Kim, Jongsun Park, Youngjae Chung p. 644-668

Effect of the cold treatment period on a plant's dormancy breaking in the winter production of Gomchwi's new varieties (Ligularia fischeri (Ledeb.) Turcz) Jong Taek Suh, Ki Deog Kim, Su Jeong Kim, Hwang Bae Sohn, Su Young Hong, Yul Ho Kim p. 683-688

Combination of grapefruit and rosemary extracts has skin protective effect through MMPs, MAPKs, and the NF-κB signaling pathway in vitro and in vivo UVB-exposed model Yeo-Cho Yoon, Hee-Jeong Choi, Ji-Hyun Park, Nurud Diniyah, Hyun-A Shin, Mi-Yeon Kim p. 633-643

The anti-inflammatory mechanism of the peel of Zanthoxylum piperitum D.C. is by suppressing NF-κB/caspase-1 activation in LPS-induced RAW264.7 cells Yun-Hee Choi, Noh-Yil Myung p. 669-676

Effect of microwave assisted water extraction on insoluble phenolic compounds through bioactivity of Fagopyrum esculentum Hyun Gi Kim, Yong Ju Kim, Thang Tung Lian, Sueng Yeob Song, Kuek Soo Bang p. 723-729

Anti-inflammatory effect of branches extracts from Quercus mongolica in LPS-induced RAW264.7 cells Hyun Ji Eo, Youngki Park, Jin Taek Kang, Gwang Hun Park p. 698-704

The beneficial effect of avocado on skin inflammation in a mouse model of AD-like skin lesions Noh-Yil Myung, Su-Jin Kim p. 705-713

Cryopreservation of in vitro grown shoot tips of strawberry (Fragaria × ananassa Duch.) genetic resources by droplet-vitrification Young-Yi Lee, Kotnala Balaraju, Jae-Young Song, Jung-Yoon Yi, Sun-Yi Lee, Jung-Ro Lee, Munsup Yoon, Haeng-Hoon Kim p. 689-697

Leaf thinning and fruit quality of 'hongro'/M.9 apple trees by foliar application of Cu-EDTA and Fe-EDTA Heon-Kyu Lim, Hyunsuk Shin, In-Chang Son, Youngjae Oh, Keumsun Kim, Sung-Il Oh, Sewon Oh, Daeil Kim p. 677-682

The protective and inhibitory effect of antioxidants found in Broussonetia kazinoki siebold against oxidative DNA damage Tae-Won Jang, Ji-Soo Choi, Hoi-Ki Kim, Eun-Ja Lee, Ki-Beom Lee, Tae-Hyung Kwon, Do-Wan Kim, Jeong-Jwa Ahn, Jae-Ho Park p. 714-722

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번호 참고문헌 국회도서관 소장유무
1 Albuquerque, U.P., U. Patil and Á. Máthé. 2018. Medicinal and Aromatic Plants of South America, Springer, Dordrecht, Netherlands. 미소장
2 Aravindhan, V. and A. Rajendran. 2014. Diversity of invasive plant species in boluvampatti forest range, the southern Western Ghats, India, Am Eurasian J Agric Environ Sci 14(8):724-731. 미소장
3 Asaf, S., A.L. Khan, A.R. Khan, M. Waqas, S.M. Kang, M.A. Khan, S.M. Lee and I.J. Lee. 2016. Complete chloroplast genome of Nicotiana otophora and its comparison with related species, Front. Plant Sci. 7:843. 미소장
4 Balogh, L., Z. Botta-Dukát and I. Dancza. 2003. What kind of plants are invasive in Hungary: In Child, L. and J.H. Brock (eds.), Plant Invasions: Ecological threats and management solutions. Backhuys Publishers, Leiden, Netherlands. pp. 131-146. 미소장
5 Corrosion inhibition of steel in sulfuric acidic solution by the Chenopodium Ambrosioides Extracts 네이버 미소장
6 Antimicrobial activity of green silver nanoparticles from endophytic fungi isolated from Calotropis procera (Ait) latex 네이버 미소장
7 Trimmomatic: a flexible trimmer for Illumina sequence data. 네이버 미소장
8 Brahim, M.A.S., M. Fadli, L. Hassani, B. Boulay, M. Markouk, K. Bekkouche, A. Abbad, M.A. Ali and M. Larhsini. 2015. Chenopodium ambrosioides var. ambrosioides used in Moroccan traditional medicine can enhance the antimicrobial activity of conventional antibiotics, Ind. Crop. Prod. 71:37-43. 미소장
9 Brown, C.J., I.A.W. Macdonald and S. Brown. 1985. Invasive alien organisms in South West Africa/Namibia, Foundation for Research Development: CSIR. 미소장
10 Antifungal Properties of Chenopodium ambrosioides Essential Oil Against Candida Species 네이버 미소장
11 Chen, J., Z. Hao, H. Xu, L. Yang, G. Liu, Y. Sheng, C. Zheng, W. Zheng, T. Cheng and J. Shi. 2015. The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng, Front. Plant Sci. 6:447. 미소장
12 Chen, Y. and Z. Yang. 2018. Characterization of the complete plastome of Dysphania botrys, a candidate plant for cancer treatment, Mitochondrial DNA B 3(2):1214-1215. 미소장
13 Cheng, J., Z. Zhao, B. Li, C. Qin, Z. Wu, D.L. Trejo-Saavedra, X. Luo, J. Cui, R.F. Rivera-Bustamante and S. Li. 2016. A comprehensive characterization of simple sequence repeats in pepper genomes provides valuable resources for marker development in Capsicum, Sci. Rep. 6:18919. 미소장
14 The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence. 네이버 미소장
15 Dillon, S.J. and A.S. Markey. 2016. Dysphania congestiflora (Chenopodiaceae), a new species from Western Australia, Nuytsia 27:133-138. 미소장
16 Dogra, K., R. Kohli and S. Sood. 2009. An assessment and impact of three invasive species in the Shivalik hills of Himachal Pradesh, India, Int J Biodivers Conserv 1(1):004-010. 미소장
17 Dong, W., C. Xu, D. Li, X. Jin, R. Li, Q. Lu and Z. Suo. 2016. Comparative analysis of the complete chloroplast genome sequences in psammophytic Haloxylon species (Amaranthaceae), PeerJ 4:e2699. 미소장
18 Ornamental Plants as Invasive Aliens: Problems and Solutions in Kruger National Park, South Africa 네이버 미소장
19 Towards a species level tree of the globally diverse genus Chenopodium (Chenopodiaceae) 네이버 미소장
20 A novel phylogeny-based generic classification for Chenopodium sensu lato, and a tribal rearrangement of Chenopodioideae (Chenopodiaceae) 네이버 미소장
21 Goia, I., C.M. Ciocanea and A.A. Gavrilidis. 2014. Geographic origins of invasive alien species in “Iron Gates” Natural Park (Banat, Romania), Transylv. Rev. Syst. Ecol. Res. 16(3):115-130. 미소장
22 Han, B.W., H.R. Na and J.O. Hyun. 2018. Floristic study of Jindo island, Korean J. Plant Res. 31(2):162-194 (in Korean). 미소장
23 Hegazy, A., S. Mussa and H. Farrag. 2008. Invasive plant communities in the Nile Delta coast, Global J. Environ. Res. 2(1):53-61. 미소장
24 Hong, S.Y., K.S. Cheon, K.O. Yoo, H.O. Lee, K.S. Cho, J.T. Suh, S.J. Kim, J.H. Nam, H.B. Sohn and Y.H. Kim. 2017. Complete chloroplast genome sequences and comparative analysis of Chenopodium quinoa and C. album, Front. Plant Sci. 8:1696. 미소장
25 Studies on the Anti–Inflammatory and Analgesic Properties of Chenopodium Ambrosioides Leaf Extract in Rats 네이버 미소장
26 Composition and antifungal activity of the essential oil of the Brazilian Chenopodium ambrosioides L. 네이버 미소장
27 Jeon, J.H. and S.C. Kim. 2019. Comparative Analysis of the Complete Chloroplast Genome Sequences of Three Closely Related East-Asian Wild Roses (Rosa sect. Synstylae;Rosaceae), Genes 10(1):23. 미소장
28 Phylogeny of Amaranthaceae and Chenopodiaceae and the Evolution of C4Photosynthesis 네이버 미소장
29 Molecular phylogeny of Atripliceae (Chenopodioideae, Chenopodiaceae): Implications for systematics, biogeography, flower and fruit evolution, and the origin of C4 photosynthesis. 네이버 미소장
30 MAFFT multiple sequence alignment software version 7: improvements in performance and usability. 네이버 미소장
31 Kim, S.H., J. Yang, J. Park, T. Yamada, M. Maki and S.C. Kim. 2019. Comparison of Whole Plastome Sequences between Thermogenic Skunk Cabbage Symplocarpus renifolius and Nonthermogenic S. nipponicus (Orontioideae; Araceae) in East Asia, Int. J. Mol. Sci. 20(19):4678. 미소장
32 Kim, Y., Y. Chung and J. Park. 2019. The complete chloroplast genome sequence of Dysphania pumilio (R. Br.) Mosyakin & Clemants (Amaranthaceae), Mitochondrial DNA B 4(1):403-404. 미소장
33 Monoterpene hydroperoxides with trypanocidal activity from Chenopodium ambrosioides. 네이버 미소장
34 Evaluation of Chenopodium ambrosioides oil as a potential source of antifungal, antiaflatoxigenic and antioxidant activity 네이버 미소장
35 Lee, Y.M., S.H. Park, S.Y. Jung, S.H. Oh and J.C. Yang. 2011. Study on the current status of naturalized plants in South Korea, Korean J. Pl. Taxon 41(1):87-101. 미소장
36 Li, H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv preprint arXiv:1303.3997. 미소장
37 The Sequence Alignment/Map format and SAMtools. 네이버 미소장
38 Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros. 네이버 미소장
39 Complete chloroplast genome of Camellia japonica genome structures, comparative and phylogenetic analysis 네이버 미소장
40 Li, Z.Z., J. Saina, A. Gichira, C. Kyalo, Q.F. Wang and J.M. Chen. 2018. Comparative genomics of the balsaminaceae sister genera Hydrocera triflora and Impatiens pinfanensis, Int. J. Mol. Sci. 19(1):319. 미소장
41 Invasive alien plants in China: role of clonality and geographical origin 네이버 미소장
42 Lohse, M., O. Drechsel and R. Bock. 2007. Organellar GenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes, Curr. Genet. 52(5-6):267-274. 미소장
43 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. 네이버 미소장
44 The impact of next-generation sequencing technology on genetics 네이버 미소장
45 Maslo, S. 2016. Preliminary list of invasive alien plant species (IAS) in Bosnia and Herzegovina, Herbologia 16(1): 1-14. 미소장
46 Metzker, M.L. 2010. Sequencing technologies-the next generation, Nat. Rev. Genet. 11(1):31. 미소장
47 Mito, T. and T. Uesugi. 2004. Invasive alien species in Japan:the status quo and the new regulation for prevention of their adverse effects, Global Environmental Research 8(2):171-193. 미소장
48 Activity of the essential oil from Chenopodium ambrosioides grown in Cuba against Leishmania amazonensis. 네이버 미소장
49 Monzote, L., M. García, J. Pastor, L. Gil, R. Scull, L. Maes, P. Cos and L. Gille. 2014. Essential oil from Chenopodium ambrosioides and main components: activity against Leishmania, their mitochondria and other microorganisms, Exp. Parasitol. 136:20-26. 미소장
50 Mosyakin, S.L. and S.E. Clemants. 2002. New nomenclatural combinations in Dysphania R. Br.(Chenopodiaceae): taxa occurring in North America, Ukr. Bot. Zhur. 59(4):380-385. 미소장
51 FURTHER TRANSFERS OF GLANDULAR-PUBESCENT SPECIES FROM CHENOPODIUM SUBG. AMBROSIA TO DYSPHANIA (CHENOPODIACEAE) 네이버 미소장
52 Nei, M. and W.H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases, PNASU. 76(10):5269-5273. 미소장
53 IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies 네이버 미소장
54 Pace, L. and F. Tammaro. 2001. The main invasive alien plants in the protected areas in central Italy (Abruzzo): In Visconti, G., M. Beniston, E.D. Iannorelli, D. Barba (eds.), Global Change and Protected Areas, Springer, Dordrecht, Netherlands. pp. 495-504. 미소장
55 Repellent activity of some essential oils against two stored product beetles Callosobruchus chinensis L. and C. maculatus F. (Coleoptera: Bruchidae) with reference to Chenopodium ambrosioides L. oil for the safety of pigeon pea seeds 네이버 미소장
56 The second complete chloroplast genome of Dysphania pumilio (R.Br.) mosyakin & clemants (Amranthaceae): intraspecies variation of invasive weeds 네이버 미소장
57 Clausena anisata and Dysphania ambrosioides essential oils: from ethno-medicine to modern uses as effective insecticides 네이버 미소장
58 Perth, U. 2011. Dysphania sect. Botryoides (Amaranthaceae s. lat.) in Asia, Willdenowia 43(1):65-80. 미소장
59 In vitro and in vivo antifungal activity of essential oils of Cymbopogon martini and Chenopodium ambrosioides and their synergism against dermatophytes 네이버 미소장
60 Rastogi, J., D. Rawat and S. Chandra. 2015. Diversity of invasive alien species in Pantnagar flora, Tropical Plant Research 2(3):282-287. 미소장
61 Antioxidant, intestinal immune status and anti-inflammatory potential of Chenopodium ambrosioides L. in fish: In vitro and in vivo studies 네이버 미소장
62 Rossi-Bergamann, B., S.S. Costa and V.L.G.D. Moraes. 1997. Brazilian medicinal plants: a rich source of immunomodulatory substances, Ciênc. Cult. 49(5/6):395-401. 미소장
63 Sekar, K.C. 2012. Invasive alien plants of Indian Himalayan region-diversity and implication, Am J Plant Sci 3(02):177. 미소장
64 Mining and analysis of simple sequence repeats in the chloroplast genomes of genus Vigna 네이버 미소장
65 Genetic diversity in the northernmost Oryza rufipogon populations estimated by SSR markers 네이버 미소장
66 Stohlgren, T.J., L.L. Loope and L.J. Makarick. 2013. Invasive plants in the United States national parks. In Foxcroft, L.C., P. Pyšek, D.M. Richardson, and P. Genovesi (eds.), Plant Invasions in Protected Areas: Patterns, problems and challenges, Springer, Dordrecht, Netherlands. pp. 267-283. 미소장
67 Taxonomic notes on Dysphania and Atriplex (Chenopodiaceae) 네이버 미소장
68 Molecular phylogenetic data and seed coat anatomy resolve the generic position of some critical Chenopodioideae (Chenopodiaceae - Amaranthaceae) with reduced perianth segments. 네이버 미소장
69 A new species of Dysphania (Chenopodioideae, Chenopodiaceae) from South-West Tibet and East Himalaya 네이버 미소장
70 Thomson, A.M., O.M. Vargas and C.W. Dick. 2017. Comparative analysis of 24 chloroplast genomes yields highly informative genetic markers for the Brazil nut family (Lecythidaceae). bioRxiv:192112. 미소장
71 Verloove, F. 2013. New xenophytes from Gran Canaria (Canary Islands, Spain), with emphasis on naturalized and (potentially) invasive species, Collect Bot 32:59-82. 미소장
72 The Non-Native Vascular Flora of Belgium: A New Nothospecies and Three New Combinations 네이버 미소장
73 Allelopathy of Volatile Oil from Chenopodium ambrosioides L.on Receptors 네이버 미소장
74 Wang, M.L., N.A. Barkley and T.M. Jenkins. 2009. Microsatellite markers in plants and insects. Part I:Applications of biotechnology, Genes, Genomes and Genomics 3(1):54-67. 미소장
75 Wang, W., S. Chen and X. Zhang. 2018. Whole-genome comparison reveals divergent IR borders and mutation hotspots in chloroplast genomes of herbaceous bamboos (Bambusoideae: Olyreae), Molecules 23(7):1537. 미소장
76 Assessing the risk of potentially invasive plant species in central Europe 네이버 미소장
77 Wei, H., J. Liu, B. Li, Z. Zhan, Y. Chen, H. Tian, S. Lin and X. Gu. 2015. The toxicity and physiological effect of essential oil from Chenopodium ambrosioides against the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae), Crop. Prot. 76:68-74. 미소장
78 Loss of duplicate gene expression in tetraploid Chenopodium 네이버 미소장
79 Population structure, genetic diversity and linkage disequilibrium in elite winter wheat assessed with SNP and SSR markers. 네이버 미소장
80 Xie, D.F., Y. Yu, Y.Q. Deng, J. Li, H.Y. Liu, S.D. Zhou and X.J. He. 2018. Comparative analysis of the chloroplast genomes of the Chinese endemic genus Urophysa and their contribution to chloroplast phylogeny and adaptive evolution, Int. J. Mol. Sci. 19(7):1847. 미소장
81 An inventory of invasive alien species in China 네이버 미소장
82 Yang, Y., T. Zhou, D. Duan, J. Yang, L. Feng and G. Zhao. 2016. Comparative analysis of the complete chloroplast genomes of five Quercus species, Front. Plant Sci. 7:959. 미소장
83 Velvet: algorithms for de novo short read assembly using de Bruijn graphs. 네이버 미소장
84 Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study 네이버 미소장
85 Zhu, G., S.L. Mosyakin, and S.E. Clemants. 2003. Chenopodiaceae: In Zhengyi, W. and P.H. Raven (eds.), Flora of China. Vol. 5 (Ulmaceae through Basellaceae). Science Press, Beijing, China and Missouri Botanical Garden Press, St. Louis, USA. pp. 351-414. 미소장

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