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기사명 저자명 페이지 원문 목차
In planta Agrobacterium-mediated transformation of L-asparaginase gene into potato (Solanum tuberosum L.) cv. Agria : an efficient and novel method Amir Gharghi, Arezoo Nazeri, Ali Niazi p. 149-158
Plant regeneration via callus‑mediated organogenesis in commercial variety of Chuanbeichai No. 1 in Bupleurum chinense DC Yuchan Li, Jun Zhao, Hua Chen, Xia Yu, Hui Li, Yu Zhang, Liang Feng, Zhe Wu, Wenlin Xie, Dabin Hou, Ma Yu p. 159-169
Molecular characterization of tall fescue germplasm using SNP markers : population structure, linkage disequilibrium, and association mapping of yield-related traits Zeynab Shahabzadeh, Reza Darvishzadeh, Reza Mohammadi, Morad Jafari, Hadi Alipour p. 171-190
Identification of a novel QTL for grain number per panicle employing NGS-based QTL-seq approach in rice (Oryza sativa L.) Reddyyamini Bommisetty, Navajeet Chakravartty, K.R. Hariprasad, P. Rameshbabu, P. Sudhakar, Reddaiah Bodanapu, Jeevula Bhukya Naik, B.V. Bhaskar Reddy, Sivrama Prasad Lekkala, Saurabh Gupta, Bhaben Tanti, V.B.R. Lachagari, Lakshminarayana R. Vemireddy p. 191-201
Overexpression of anthocyanin regulatory transcription factors can alleviate salt stress-induced growth inhibition in torenia 'Kauai Rose' Rundong Zhao, Aung Htay Naing, Junping Xu, Chang Kil Kim p. 203-212
Analysis of microRNAs in response to cycloastragenol by small RNA sequencing in Arabidopsis thaliana Wissem Mhiri, Neslihan Turgut Kara, Barbaros Nalbantoğlu, Özgür Çakır p. 213-228
Transcriptional responses of hypericin and hyperforin to methyl jasmonate elicitation in Hypericum perforatum Nafiseh Noormohammadi, Ahmad Ismaili, Ahmad Sobhani Najafabadi, Farhad Nazarian-Firouzabadi p. 229-241
Functional characterization of the CfAOC and CfJMT gene promoters related to MeJA biosynthesis in Cymbidium faberi Yin Zhou, Zheng Xu, Xu Chen, Junjiang Zhou, Songtai Wang, Yanqin Xu p. 243-253
Molecular characterization and differential expression of an aromatic heptaketide producing type Ⅲ plant polyketide synthase from Himalayan rhubarb Shahzad A. Pandith, Niha Dhar, Sumedha Bhosale, Vitthal T. Barvkar, Sumeer Razdan, Manzoor A. Shah, Surrinder K. Lattoo p. 255-273
Genome analysis of Zoysia japonica 'Yaji' cultivar using PacBio long-read sequencing Dae-Hwa Yang, Ok-Cheol Jeong, Hyeon-Jin Sun, Hong-Gyu Kang, Hyo-Yeon Lee p. 275-283
Genome-wide identification and functional prediction of silicon (Si) transporters in poplar (Populus trichocarpa) Md Mahmudul Hassan, Samir Martin, Kai Feng, Timothy B. Yates, Guoliang Yuan, Madhavi Z. Martin, Stanton Martin, Wellington Muchero, Natalie A. Griffiths, David J. Weston, Xiaohan Yang p. 285-302
Complete chloroplast genome sequence and phylogenetic analysis of Rhododendron molle G. Don, an endangered Ericaceae species located on Dabie Mountains (central China) Bilin Xu, Zhiliang Li, Yan Liu, Wanjing Zhang, Jiaojun Yu, Hongjin Dong, Jialiang Zhang, Shuzhen Wang p. 303-314
Genetic relationships of salep orchid species and gene flow among Serapias vomeracea × Anacamptis morio hybrids Esra Bulunuz Palaz, Fatih Demirel, Sümeyye Adali, Serap Demirel, Abdurrahim Yilmaz p. 315-327

참고문헌 (69건) : 자료제공( 네이버학술정보 )

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번호 참고문헌 국회도서관 소장유무
1 Ahanger MA, Bhat JA, Siddiqui MH et al (2020) Integration of silicon and secondary metabolites in plants: a significant association in stress tolerance. J Exp Bot 71:6758–6774. https://doi.org/10.1093/jxb/eraa291 미소장
2 Almagro Armenteros JJ, Sønderby CK, Sønderby SK et al (2017) DeepLoc: prediction of protein subcellular localization using deep learning. Bioinformatics 33:3387–3395. https://doi.org/10.1093/bioinformatics/btx431 미소장
3 Armenteros JJA, Tsirigos KD, Sønderby CK et al (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks. Nat Biotechnol 37:420–423. https://doi.org/10.1038/s41587-019-0036-z 미소장
4 Bailey TL, Williams N, Misleh C, Li WW (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34:W369–W373. https://doi.org/10.1093/nar/gkl198 미소장
5 Bateman A, Birney E, Cerruti L et al (2002) The Pfam protein families database. Nucleic Acids Res 30:276–280. https://doi.org/10.1093/nar/30.1.276 미소장
6 Buchfink B, Xie C, Huson DH (2015) Fast and sensitive protein alignment using DIAMOND. Nat Methods 12:59–60. https://doi.org/10.1038/nmeth.3176 미소장
7 Chiba Y, Mitani N, Yamaji N, Ma JF (2009) HvLsi1 is a silicon influx transporter in barley. Plant J 57:810–818. https://doi.org/10.1111/j.1365-313X.2008.03728.x 미소장
8 Dar MI, Naikoo MI, Rehman F et al (2016) Proline accumulation in plants: roles in stress tolerance and plant development. In: Iqbal N, Nazar R, Nafees A, Khan N (eds) Osmolytes and plants acclimation to changing environment: emerging omics technologies. Springer, New Delhi, pp 155–166 미소장
9 David A, Islam S, Tankhilevich E, Sternberg MJE (2022) The alphafold database of protein structures: a biologist’s guide. J Mol Biol 434:167336. https://doi.org/10.1016/j.jmb.2021.167336 미소장
10 Deshmukh RK, Vivancos J, Guérin V et al (2013) Identification and functional characterization of silicon transporters in soybean using comparative genomics of major intrinsic proteins in Arabidopsis and rice. Plant Mol Biol 83:303–315. https://doi.org/10.1007/s11103-013-0087-3 미소장
11 Deshmukh RK, Vivancos J, Ramakrishnan G et al (2015) A precise spacing between the NPA domains of aquaporins is essential for silicon permeability in plants. Plant J 83:489–500. https://doi.org/10.1111/tpj.12904 미소장
12 Enright AJ, Van Dongen S, Ouzounis CA (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 30:1575–1584. https://doi.org/10.1093/nar/30.7.1575 미소장
13 Gasteiger E, Hoogland C, Gattiker A et al (2005) Protein identification and analysis tools on the expasy server. In: Walker JM (ed) The proteomics protocols handbook. Humana Press, Totowa, pp 571–607 미소장
14 Gaur S, Kumar J, Kumar D et al (2020) Fascinating impact of silicon and silicon transporters in plants: a review. Ecotoxicol Environ Saf 202:110885. https://doi.org/10.1016/j.ecoenv.2020.110885 미소장
15 Goodstein DM, Shu S, Howson R et al (2012) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 40:D1178–D1186. https://doi.org/10.1093/nar/gkr944 미소장
16 Grégoire C, Rémus-Borel W, Vivancos J et al (2012) Discovery of a multigene family of aquaporin silicon transporters in the primitive plant Equisetum arvense. Plant J 72:320–330. https://doi.org/10.1111/j.1365-313X.2012.05082.x 미소장
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18 Hayat S, Hayat Q, Alyemeni MN et al (2012) Role of proline under changing environments: a review. Plant Signal Behav 7:1456–1466. https://doi.org/10.4161/psb.21949 미소장
19 Horton P, Park K-J, Obayashi T et al (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res 35:W585–W587. https://doi.org/10.1093/nar/gkm259 미소장
20 Ishikawa F, Suga S, Uemura T et al (2005) Novel type aquaporin SIPs are mainly localized to the ER membrane and show cell-specific expression in Arabidopsis thaliana. FEBS Lett 579:5814–5820. https://doi.org/10.1016/j.febslet.2005.09.076 미소장
21 Jadhao KR, Bansal A, Rout GR (2020) Silicon amendment induces synergistic plant defense mechanism against pink stem borer (Sesamia inferens Walker) in finger millet (Eleusine coracana Gaertn). Sci Rep 10:4229 미소장
22 Johanson U, Gustavsson S (2002) A new subfamily of major intrinsic proteins in plants. Mol Biol Evol 19:456–461. https://doi.org/10.1093/oxfordjournals.molbev.a004101 미소장
23 Jones P, Binns D, Chang H-Y et al (2014) InterProScan 5: genome-scale protein function classification. Bioinformatics 30:1236–1240. https://doi.org/10.1093/bioinformatics/btu031 미소장
24 Jumper J, Evans R, Pritzel A et al (2021) Highly accurate protein structure prediction with AlphaFold. Nature 596:583–589. https://doi.org/10.1038/s41586-021-03819-2 미소장
25 Kanehisa M, Sato Y, Morishima K (2016) Blastkoala and ghostkoala: KEGG tools for functional characterization of genome and metagenome sequences. J Mol Biol 428:726–731. https://doi.org/10.1016/j.jmb.2015.11.006 미소장
26 Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780. https://doi.org/10.1093/molbev/mst010 미소장
27 Kaur H, Greger M (2019) A review on si uptake and transport system. Plants. https://doi.org/10.3390/plants8040081 미소장
28 Kauss H, Seehaus K, Franke R et al (2003) Silica deposition by a strongly cationic proline-rich protein from systemically resistant cucumber plants. Plant J 33:87–95. https://doi.org/10.1046/j.1365-313x.2003.01606.x 미소장
29 Krogh A, Larsson B, von Heijne G, Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305:567–580. https://doi.org/10.1006/jmbi.2000.4315 미소장
30 Kulmanov M, Hoehndorf R (2020) DeepGOPlus: improved protein function prediction from sequence. Bioinformatics 36:422–429. https://doi.org/10.1093/bioinformatics/btz595 미소장
31 Kumar S, Soukup M, Elbaum R (2017) Silicification in grasses: variation between different cell types. Front Plant Sci 8:438. https://doi.org/10.3389/fpls.2017.00438 미소장
32 Kumar S, Stecher G, Li M et al (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549. https://doi.org/10.1093/molbev/msy096 미소장
33 Kumar S, Adiram-Filiba N, Blum S et al (2020) Siliplant1 protein precipitates silica in sorghum silica cells. J Exp Bot 71:6830–6843. https://doi.org/10.1093/jxb/eraa258 미소장
34 Ma JF, Yamaji N (2015) A cooperative system of silicon transport in plants. Trends Plant Sci 20:435–442. https://doi.org/10.1016/j.tplants.2015.04.007 미소장
35 Ma JF, Tamai K, Yamaji N et al (2006) A silicon transporter in rice. Nature 440:688–691. https://doi.org/10.1038/nature04590 미소장
36 Ma JF, Yamaji N, Mitani N et al (2007) An efflux transporter of silicon in rice. Nature 448:209–212. https://doi.org/10.1038/nature05964 미소장
37 Ma JF, Yamaji N, Mitani-Ueno N (2011) Transport of silicon from roots to panicles in plants. Proc Jpn Acad Ser B 87:377–385. https://doi.org/10.2183/pjab.87.377 미소장
38 Madeira F, Park YM, Lee J et al (2019) The EMBL-EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Res 47:W636–W641. https://doi.org/10.1093/nar/gkz268 미소장
39 Minh BQ, Schmidt HA, Chernomor O et al (2020) IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evol 37:1530–1534. https://doi.org/10.1093/molbev/msaa015 미소장
40 Mirdita M, Schütze K, Moriwaki Y et al (2022) ColabFold: making protein folding accessible to all. Nat Methods 19:679–682. https://doi.org/10.1038/s41592-022-01488-1 미소장
41 Mistry J, Chuguransky S, Williams L et al (2021) Pfam: the protein families database in 2021. Nucleic Acids Res 49:D412–D419. https://doi.org/10.1093/nar/gkaa913 미소장
42 Mitani N, Chiba Y, Yamaji N, Ma JF (2009a) Identification and characterization of maize and barley Lsi2-like silicon efflux transporters reveals a distinct silicon uptake system from that in rice. Plant Cell 21:2133–2142. https://doi.org/10.1105/tpc.109.067884 미소장
43 Mitani N, Yamaji N, Ma JF (2009b) Identification of maize silicon influx transporters. Plant Cell Physiol 50:5–12. https://doi.org/10.1093/pcp/pcn110 미소장
44 Mitani N, Yamaji N, Ago Y et al (2011) Isolation and functional characterization of an influx silicon transporter in two pumpkin cultivars contrasting in silicon accumulation. Plant J 66:231–240. https://doi.org/10.1111/j.1365-313X.2011.04483.x 미소장
45 Mitani-Ueno N, Yamaji N, Ma JF (2011a) Silicon efflux transporters isolated from two pumpkin cultivars contrasting in Si uptake. Plant Signal Behav 6:991–994. https://doi.org/10.4161/psb.6.7.15462 미소장
46 Mitani-Ueno N, Yamaji N, Zhao F-J, Ma JF (2011b) The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron, and arsenic. J Exp Bot 62:4391–4398. https://doi.org/10.1093/jxb/err158 미소장
47 Montpetit J, Vivancos J, Mitani-Ueno N et al (2012) Cloning, functional characterization and heterologous expression of TaLsi1, a wheat silicon transporter gene. Plant Mol Biol 79:35–46. https://doi.org/10.1007/s11103-012-9892-3 미소장
48 Nawaz MA, Azeem F, Zakharenko AM et al (2020) In-silico exploration of channel type and efflux silicon transporters and silicification proteins in 80 sequenced viridiplantae genomes. Plants. https://doi.org/10.3390/plants9111612 미소장
49 Omasits U, Ahrens CH, Müller S, Wollscheid B (2014) Protter: interactive protein feature visualization and integration with experimental proteomic data. Bioinformatics 30:884–886. https://doi.org/10.1093/bioinformatics/btt607 미소장
50 Otzen D (2012) The role of proteins in biosilicification. Scientifica (cairo) 2012:867562. https://doi.org/10.6064/2012/867562 미소장
51 Ruff KM, Pappu RV (2021) Alphafold and implications for intrinsically disordered proteins. J Mol Biol 433:167208. https://doi.org/10.1016/j.jmb.2021.167208 미소장
52 Sahu SS, Loaiza CD, Kaundal R (2020) Plant-mSubP: a computational framework for the prediction of single- and multi-target protein subcellular localization using integrated machine-learning approaches. AoB Plants. https://doi.org/10.1093/aobpla/plz068 미소장
53 Sakurai G, Satake A, Yamaji N et al (2015) In silico simulation modeling reveals the importance of the Casparian strip for efficient silicon uptake in rice roots. Plant Cell Physiol 56:631–639. https://doi.org/10.1093/pcp/pcv017 미소장
54 Sakurai G, Yamaji N, Mitani-Ueno N et al (2017) A model of silicon dynamics in rice: an analysis of the investment efficiency of si transporters. Front Plant Sci 8:1187. https://doi.org/10.3389/fpls.2017.01187 미소장
55 Souri Z, Khanna K, Karimi N, Ahmad P (2020) Silicon and plants: current knowledge and future prospects. J Plant Growth Regul. https://doi.org/10.1007/s00344-020-10172-7 미소장
56 Sun H, Guo J, Duan Y et al (2017) Isolation and functional characterization of CsLsi1, a silicon transporter gene in Cucumis sativus. Physiol Plant 159:201–214. https://doi.org/10.1111/ppl.12515 미소장
57 Szklarczyk D, Gable AL, Nastou KC et al (2021) The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Res 49:D605–D612. https://doi.org/10.1093/nar/gkaa1074 미소장
58 Van Bel M, Diels T, Vancaester E et al (2018) PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. Nucleic Acids Res 46:D1190–D1196. https://doi.org/10.1093/nar/gkx1002 미소장
59 van Breugel M, Silva RE, Andreeva A (2022) Structural validation and assessment of AlphaFold2 predictions for centrosomal and centriolar proteins and their complexes. Commun Biol 5:312. https://doi.org/10.1038/s42003-022-03269-0 미소장
60 Vatansever R, Ozyigit II, Filiz E, Gozukirmizi N (2017) Genome-wide exploration of silicon (Si) transporter genes, Lsi1 and Lsi2 in plants; insights into Si-accumulation status/capacity of plants. Biometals 30:185–200. https://doi.org/10.1007/s10534-017-9992-2 미소장
61 Vivancos J, Deshmukh R, Grégoire C et al (2016) Identification and characterization of silicon efflux transporters in horsetail (Equisetum arvense). J Plant Physiol 200:82–89. https://doi.org/10.1016/j.jplph.2016.06.011 미소장
62 Waese J, Fan J, Pasha A et al (2017) ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology. Plant Cell 29:1806–1821. https://doi.org/10.1105/tpc.17.00073 미소장
63 Wallace IS, Roberts DM (2004) Homology modeling of representative subfamilies of arabidopsis major intrinsic proteins. classification based on the aromatic/arginine selectivity filter. Plant Physiol 135:1059–1068. https://doi.org/10.1104/pp.103.033415 미소장
64 Wang Y, Tang H, Debarry JD et al (2012) MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res 40:e49. https://doi.org/10.1093/nar/gkr1293 미소장
65 Waterhouse AM, Procter JB, Martin DMA et al (2009) Jalview version 2—a multiple sequence alignment editor and analysis workbench. Bioinformatics 25:1189–1191. https://doi.org/10.1093/bioinformatics/btp033 미소장
66 Yamaji N, Mitatni N, Ma JF (2008) A transporter regulating silicon distribution in rice shoots. Plant Cell 20:1381–1389. https://doi.org/10.1105/tpc.108.059311 미소장
67 Yang X, Hu R, Yin H et al (2017) The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism. Nat Commun 8:1899. https://doi.org/10.1038/s41467-017-01491-7 미소장
68 Yu C-S, Chen Y-C, Lu C-H, Hwang J-K (2006) Prediction of protein subcellular localization. Proteins 64:643–651. https://doi.org/10.1002/prot.21018 미소장
69 Zhang J, Yang Y, Zheng K et al (2018) Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus. New Phytol 220:502–516. https://doi.org/10.1111/nph.15297 미소장

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